de novo assemblies Search Results


clc de novo assembler v4.06beta.67189  (CLC Bio)
90
CLC Bio clc de novo assembler v4.06beta.67189
Clc De Novo Assembler V4.06beta.67189, supplied by CLC Bio, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/clc de novo assembler v4.06beta.67189/product/CLC Bio
Average 90 stars, based on 1 article reviews
clc de novo assembler v4.06beta.67189 - by Bioz Stars, 2026-05
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de novo hybrid assembly  (Oxford Nanopore)
90
Oxford Nanopore de novo hybrid assembly
De Novo Hybrid Assembly, supplied by Oxford Nanopore, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/de novo hybrid assembly/product/Oxford Nanopore
Average 90 stars, based on 1 article reviews
de novo hybrid assembly - by Bioz Stars, 2026-05
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de novo assembler v 6.5  (CLC Bio)
90
CLC Bio de novo assembler v 6.5
De Novo Assembler V 6.5, supplied by CLC Bio, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/de novo assembler v 6.5/product/CLC Bio
Average 90 stars, based on 1 article reviews
de novo assembler v 6.5 - by Bioz Stars, 2026-05
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de novo assemblies  (SourceForge net)
90
SourceForge net de novo assemblies
De Novo Assemblies, supplied by SourceForge net, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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de novo assemblies - by Bioz Stars, 2026-05
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trinity de novo assembled transcripts  (5 PRIME)
90
5 PRIME trinity de novo assembled transcripts
Trinity De Novo Assembled Transcripts, supplied by 5 PRIME, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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Average 90 stars, based on 1 article reviews
trinity de novo assembled transcripts - by Bioz Stars, 2026-05
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de novo assembly pipeline included in the bionano access (v.1.6 or v.1/7)  (BioNano Genomics)
90
BioNano Genomics de novo assembly pipeline included in the bionano access (v.1.6 or v.1/7)
De Novo Assembly Pipeline Included In The Bionano Access (V.1.6 Or V.1/7), supplied by BioNano Genomics, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/de novo assembly pipeline included in the bionano access (v.1.6 or v.1/7)/product/BioNano Genomics
Average 90 stars, based on 1 article reviews
de novo assembly pipeline included in the bionano access (v.1.6 or v.1/7) - by Bioz Stars, 2026-05
90/100 stars
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de novo assembly annotation of the bionano access software  (BioNano Genomics)
90
BioNano Genomics de novo assembly annotation of the bionano access software
De Novo Assembly Annotation Of The Bionano Access Software, supplied by BioNano Genomics, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/de novo assembly annotation of the bionano access software/product/BioNano Genomics
Average 90 stars, based on 1 article reviews
de novo assembly annotation of the bionano access software - by Bioz Stars, 2026-05
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de novo assembler suite from the clcbio genomic workbench version 11  (CLC Bio)
90
CLC Bio de novo assembler suite from the clcbio genomic workbench version 11
De Novo Assembler Suite From The Clcbio Genomic Workbench Version 11, supplied by CLC Bio, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/de novo assembler suite from the clcbio genomic workbench version 11/product/CLC Bio
Average 90 stars, based on 1 article reviews
de novo assembler suite from the clcbio genomic workbench version 11 - by Bioz Stars, 2026-05
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spades genome assembler  (Applied Maths)
90
Applied Maths spades genome assembler
Spades Genome Assembler, supplied by Applied Maths, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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Average 90 stars, based on 1 article reviews
spades genome assembler - by Bioz Stars, 2026-05
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de novo bionano optical maps  (BioNano Genomics)
90
BioNano Genomics de novo bionano optical maps
De Novo Bionano Optical Maps, supplied by BioNano Genomics, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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de novo bionano optical maps - by Bioz Stars, 2026-05
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de novo assemblies  (Cefas Technology Ltd)
90
Cefas Technology Ltd de novo assemblies
Geographical sampling of Spraguea isolates. Cysts were extracted from two to four fish at each of five locations worldwide. Site 1—Celtic Sea isolates (ex L. piscatorius ): Celtic Deep (51.1921, Long. −5.6975), EM120 (West Lundy, 51.17535, −5.40448), RA12034 (Carmarthen Bay, 51.5459, −4.5872), North Atlantic (exact location unknown). Site 2—New Brunswick, Canada (ex Lophius americanus ). Site 3 (ex Lophius americanus ): JS61 (South of Pt. Judith, Rhode Island, USA, 40.9192, −71.7533), RM18 (Mud Hole, New Jersey, USA, 40.16666, −73.6666), RW92 (East of Ocean City, Maryland, USA, 37.9166, −74.7533). Site 4 (ex Lophiomus setigerus ): Fukushima, Japan. Site 5 (ex Lophius vomerinus ): Cape Town, South Africa. DNA was extracted from individual cysts, and each isolate was sequenced independently. A lack of evidence for heterozygosity on any of the genome <t>assemblies</t> suggests that each cyst arises from infection by a single haploid spore, or from a small clonal population.
De Novo Assemblies, supplied by Cefas Technology Ltd, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/de novo assemblies/product/Cefas Technology Ltd
Average 90 stars, based on 1 article reviews
de novo assemblies - by Bioz Stars, 2026-05
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de novo assembly tool  (CLC Bio)
90
CLC Bio de novo assembly tool
Geographical sampling of Spraguea isolates. Cysts were extracted from two to four fish at each of five locations worldwide. Site 1—Celtic Sea isolates (ex L. piscatorius ): Celtic Deep (51.1921, Long. −5.6975), EM120 (West Lundy, 51.17535, −5.40448), RA12034 (Carmarthen Bay, 51.5459, −4.5872), North Atlantic (exact location unknown). Site 2—New Brunswick, Canada (ex Lophius americanus ). Site 3 (ex Lophius americanus ): JS61 (South of Pt. Judith, Rhode Island, USA, 40.9192, −71.7533), RM18 (Mud Hole, New Jersey, USA, 40.16666, −73.6666), RW92 (East of Ocean City, Maryland, USA, 37.9166, −74.7533). Site 4 (ex Lophiomus setigerus ): Fukushima, Japan. Site 5 (ex Lophius vomerinus ): Cape Town, South Africa. DNA was extracted from individual cysts, and each isolate was sequenced independently. A lack of evidence for heterozygosity on any of the genome <t>assemblies</t> suggests that each cyst arises from infection by a single haploid spore, or from a small clonal population.
De Novo Assembly Tool, supplied by CLC Bio, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/de novo assembly tool/product/CLC Bio
Average 90 stars, based on 1 article reviews
de novo assembly tool - by Bioz Stars, 2026-05
90/100 stars
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Image Search Results


Geographical sampling of Spraguea isolates. Cysts were extracted from two to four fish at each of five locations worldwide. Site 1—Celtic Sea isolates (ex L. piscatorius ): Celtic Deep (51.1921, Long. −5.6975), EM120 (West Lundy, 51.17535, −5.40448), RA12034 (Carmarthen Bay, 51.5459, −4.5872), North Atlantic (exact location unknown). Site 2—New Brunswick, Canada (ex Lophius americanus ). Site 3 (ex Lophius americanus ): JS61 (South of Pt. Judith, Rhode Island, USA, 40.9192, −71.7533), RM18 (Mud Hole, New Jersey, USA, 40.16666, −73.6666), RW92 (East of Ocean City, Maryland, USA, 37.9166, −74.7533). Site 4 (ex Lophiomus setigerus ): Fukushima, Japan. Site 5 (ex Lophius vomerinus ): Cape Town, South Africa. DNA was extracted from individual cysts, and each isolate was sequenced independently. A lack of evidence for heterozygosity on any of the genome assemblies suggests that each cyst arises from infection by a single haploid spore, or from a small clonal population.

Journal: Molecular Biology and Evolution

Article Title: A Recent Whole-Genome Duplication Divides Populations of a Globally Distributed Microsporidian

doi: 10.1093/molbev/msw083

Figure Lengend Snippet: Geographical sampling of Spraguea isolates. Cysts were extracted from two to four fish at each of five locations worldwide. Site 1—Celtic Sea isolates (ex L. piscatorius ): Celtic Deep (51.1921, Long. −5.6975), EM120 (West Lundy, 51.17535, −5.40448), RA12034 (Carmarthen Bay, 51.5459, −4.5872), North Atlantic (exact location unknown). Site 2—New Brunswick, Canada (ex Lophius americanus ). Site 3 (ex Lophius americanus ): JS61 (South of Pt. Judith, Rhode Island, USA, 40.9192, −71.7533), RM18 (Mud Hole, New Jersey, USA, 40.16666, −73.6666), RW92 (East of Ocean City, Maryland, USA, 37.9166, −74.7533). Site 4 (ex Lophiomus setigerus ): Fukushima, Japan. Site 5 (ex Lophius vomerinus ): Cape Town, South Africa. DNA was extracted from individual cysts, and each isolate was sequenced independently. A lack of evidence for heterozygosity on any of the genome assemblies suggests that each cyst arises from infection by a single haploid spore, or from a small clonal population.

Article Snippet: As the best of these de novo assemblies (that belonging to the Cefas “Celtic Deep” isolate) was longer and more contiguous (N50: 102,899 bp; Largest contig: 314,819 bp; number of contigs: 295; total assembly size: 5,742,641 bp) than the original S p . lophii genome assembly , we used it as our reference genome for subsequent analyses.

Techniques: Sampling, Infection